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Yeah, user error on my end, never mind. The persisted settings.yaml overrides the command line arguments. That's surprising to me. I expected the command line options to overrule the config file. Oh well.
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@lyse@lyse.isobeef.org to be fair the settings that you can change in the user interface are persisted to the settings YAML file and yes override any environmental command online options. This is always made sense to me because there are subset of settings that can be changed dynamically at runtime without requiring any restart.